Overall
Plot
Individual metrics
Overall
Batch correction
Batch correction
PCR batch
Batch ASW
Graph iLISI
Graph connectivity
kBET
Bio conservation
Bio conservation
NMI cluster/label
ARI cluster/label
Label ASW
Isolated label F1
Isolated label silhouette
Graph cLISI
HVG conservation
Cell cycle conservation
Trajectory conservation
Embeddings
Full
Scaled
MNN (Features)
Scanorama (Embedding)
Seurat v3 (Features)
Harmony (Embedding)
BBKNN (Graph)
ComBat (Features)
FastMNN (Embedding)
FastMNN (Features)
Unscaled
MNN (Features)
Scanorama (Embedding)
Seurat v3 (Features)
Harmony (Embedding)
BBKNN (Graph)
scVI (Embedding)
ComBat (Features)
LIGER (Embedding)
scANVI (Embedding)
FastMNN (Embedding)
FastMNN (Features)
Unintegrated (Features)
HVG
Scaled
MNN (Features)
Scanorama (Embedding)
Seurat v3 (Features)
Harmony (Embedding)
BBKNN (Graph)
ComBat (Features)
FastMNN (Embedding)
FastMNN (Features)
Unscaled
MNN (Features)
Scanorama (Embedding)
Seurat v3 (Features)
Harmony (Embedding)
BBKNN (Graph)
scVI (Embedding)
ComBat (Features)
LIGER (Embedding)
scANVI (Embedding)
FastMNN (Embedding)
FastMNN (Features)
